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application imariscell  (Oxford Instruments)


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    Structured Review

    Oxford Instruments application imariscell
    (A) The original image used for all softwares. (B) FIJI: visualization of 2D (left) and 3D (right) segmentation results of the binary watershed segmentation option. (C) CellProfiler: Visualization of the 2D (top) and 3D (below) monolayer segmentation results using IdentifyObjects and Measure modules. (D) <t>ImarisCell:</t> Visualization of the 2D (left) and 3D (right) segmentation results. (E) ShapeMetrics: visualization of the 2D (left) and 3D (right) watershed segmentation results.
    Application Imariscell, supplied by Oxford Instruments, used in various techniques. Bioz Stars score: 99/100, based on 43416 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/application+imariscell/pmc09624194-219-31-28?v=Oxford+Instruments
    Average 99 stars, based on 43416 article reviews
    application imariscell - by Bioz Stars, 2026-07
    99/100 stars

    Images

    1) Product Images from "ShapeMetrics: A userfriendly pipeline for 3D cell segmentation and spatial tissue analysis"

    Article Title: ShapeMetrics: A userfriendly pipeline for 3D cell segmentation and spatial tissue analysis

    Journal: Developmental biology

    doi: 10.1016/j.ydbio.2020.02.003

    (A) The original image used for all softwares. (B) FIJI: visualization of 2D (left) and 3D (right) segmentation results of the binary watershed segmentation option. (C) CellProfiler: Visualization of the 2D (top) and 3D (below) monolayer segmentation results using IdentifyObjects and Measure modules. (D) ImarisCell: Visualization of the 2D (left) and 3D (right) segmentation results. (E) ShapeMetrics: visualization of the 2D (left) and 3D (right) watershed segmentation results.
    Figure Legend Snippet: (A) The original image used for all softwares. (B) FIJI: visualization of 2D (left) and 3D (right) segmentation results of the binary watershed segmentation option. (C) CellProfiler: Visualization of the 2D (top) and 3D (below) monolayer segmentation results using IdentifyObjects and Measure modules. (D) ImarisCell: Visualization of the 2D (left) and 3D (right) segmentation results. (E) ShapeMetrics: visualization of the 2D (left) and 3D (right) watershed segmentation results.

    Techniques Used:

    The quantitative results of the comparison show that our code ShapeMetrics outputs very similar cell numbers and volumes as ImarisCell. Fiji, on the other hand, outputs a similar number of cells but the mean volume of the cells as well as the visualization in <xref ref-type= Fig. 7 reveal that the segmentation is not successful. CellProfiler is not applicable for 3D segmentation of cells." title="... outputs very similar cell numbers and volumes as ImarisCell. Fiji, on the other hand, outputs ..." property="contentUrl" width="100%" height="100%"/>
    Figure Legend Snippet: The quantitative results of the comparison show that our code ShapeMetrics outputs very similar cell numbers and volumes as ImarisCell. Fiji, on the other hand, outputs a similar number of cells but the mean volume of the cells as well as the visualization in Fig. 7 reveal that the segmentation is not successful. CellProfiler is not applicable for 3D segmentation of cells.

    Techniques Used: Comparison



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    application imariscell  (Oxford Instruments)
    99
    Oxford Instruments application imariscell
    (A) The original image used for all softwares. (B) FIJI: visualization of 2D (left) and 3D (right) segmentation results of the binary watershed segmentation option. (C) CellProfiler: Visualization of the 2D (top) and 3D (below) monolayer segmentation results using IdentifyObjects and Measure modules. (D) <t>ImarisCell:</t> Visualization of the 2D (left) and 3D (right) segmentation results. (E) ShapeMetrics: visualization of the 2D (left) and 3D (right) watershed segmentation results.
    Application Imariscell, supplied by Oxford Instruments, used in various techniques. Bioz Stars score: 99/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/application+imariscell/pmc09624194-219-31-28?v=Oxford+Instruments
    Average 99 stars, based on 1 article reviews
    application imariscell - by Bioz Stars, 2026-07
    99/100 stars
    		  Buy from Supplier

    Image Search Results


    (A) The original image used for all softwares. (B) FIJI: visualization of 2D (left) and 3D (right) segmentation results of the binary watershed segmentation option. (C) CellProfiler: Visualization of the 2D (top) and 3D (below) monolayer segmentation results using IdentifyObjects and Measure modules. (D) ImarisCell: Visualization of the 2D (left) and 3D (right) segmentation results. (E) ShapeMetrics: visualization of the 2D (left) and 3D (right) watershed segmentation results.

    Journal: Developmental biology

    Article Title: ShapeMetrics: A userfriendly pipeline for 3D cell segmentation and spatial tissue analysis

    doi: 10.1016/j.ydbio.2020.02.003

    Figure Lengend Snippet: (A) The original image used for all softwares. (B) FIJI: visualization of 2D (left) and 3D (right) segmentation results of the binary watershed segmentation option. (C) CellProfiler: Visualization of the 2D (top) and 3D (below) monolayer segmentation results using IdentifyObjects and Measure modules. (D) ImarisCell: Visualization of the 2D (left) and 3D (right) segmentation results. (E) ShapeMetrics: visualization of the 2D (left) and 3D (right) watershed segmentation results.

    Article Snippet: The performance of our new MATLAB-based pipeline, ShapeMetrics, was compared to multiple existing free programs including ImageJ/FIJI, CellProfiler ™ , and CellSegm as well as the commercially available Imaris and its application ImarisCell specifically developed for this type of 3D and 2D analysis of cells.

    Techniques:

    The quantitative results of the comparison show that our code ShapeMetrics outputs very similar cell numbers and volumes as ImarisCell. Fiji, on the other hand, outputs a similar number of cells but the mean volume of the cells as well as the visualization in <xref ref-type= Fig. 7 reveal that the segmentation is not successful. CellProfiler is not applicable for 3D segmentation of cells." width="100%" height="100%">

    Journal: Developmental biology

    Article Title: ShapeMetrics: A userfriendly pipeline for 3D cell segmentation and spatial tissue analysis

    doi: 10.1016/j.ydbio.2020.02.003

    Figure Lengend Snippet: The quantitative results of the comparison show that our code ShapeMetrics outputs very similar cell numbers and volumes as ImarisCell. Fiji, on the other hand, outputs a similar number of cells but the mean volume of the cells as well as the visualization in Fig. 7 reveal that the segmentation is not successful. CellProfiler is not applicable for 3D segmentation of cells.

    Article Snippet: The performance of our new MATLAB-based pipeline, ShapeMetrics, was compared to multiple existing free programs including ImageJ/FIJI, CellProfiler ™ , and CellSegm as well as the commercially available Imaris and its application ImarisCell specifically developed for this type of 3D and 2D analysis of cells.

    Techniques: Comparison